Scaffold Ga0208919_1000253

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1000253
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39161
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (77.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017843	Metagenome / Metatranscriptome	238	N
F035335	Metagenome	172	N
F039343	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100025351	F035335	N/A	MNIDAKFFGIIIFLVSQTAAGIWWAASLSSEVERLGGVQGTSIPSIEKAIEGLDVMGFRVNQLSKDLEKINNRNDDIEDQHSRLFEALQGNQIQQNSKGYGGYE
Ga0208919_100025353	F017843	AGGA	MKKLLFALLFLPMSLFAADFDKIGVDVSGSNDQGVHFGIADSGSLRLALAGEGYTFTFNQDGNDIAVSSYGVELSRSDSKNIGVGYGAGIGIFDGGVHYHWMSSGDHIVGGATTLTVAGVSLETSADWNLSASDVNGKVGTSLDLWGAKASAISKWDIDDLSYDGLELGAGYAIPVAAGIHITPSVGMDFDGDWERGDATASVSINLSFGRNGIPAS
Ga0208919_10002539	F039343	GAGG	MADLYRLNNFNYTFTATDSSVLLSDAISAQCNAIIINASEPVFIKITKHGDAATAGSCGYFIKDWPHYVRVSGGDRVAGLRAGSSNSVVYITELTE