Scaffold Ga0209348_1110196

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209348_1110196

Scaffold Ga0209348_1110196

Overview

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1110196 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	846
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_11101962	F021207	AGGA	MSKRFKQVNVQHFATLVQEIDVSKYTHKEYVEIVEELYMSIFRHNTSGDYVIPTMPNEKGNWKVHKPSATKEEVMELIKKGQVIWDKNVI
Ga0209348_11101963	F105326	AGGA	MGQERNLTPTQHWELHQGLWSMLGCDMQLKYKDKTTAIYVDNKAKLKYTYSTKGFIKWFPISKENKI

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