NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1098185

Scaffold Ga0209348_1098185


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1098185 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)914
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018189Metagenome236Y
F058913Metagenome134Y
F080142Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10981852F058913AGGAGGMKLTKEEARWLDDKWNDFYYYFQVEDMYIKDQEMYKSIGQKLSEIKQ
Ga0209348_10981853F080142GGAGMKVGAGEFIKTNSGEVIWGSEAFIDEVFKILYGNEFRNEIWSYDDALNKIKNLVQLQEQN
Ga0209348_10981855F018189GAGGMELTKKQMEKVLYELRCAYNSRINDDEDLYEIINLFKKYLNSGETK

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