NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1048479

Scaffold Ga0209348_1048479


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1048479 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1443
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F011410Metagenome291Y
F023621Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10484793F023621AGGAGMTLLNKRIDNVLKVMREAKDYECKMIWNKHLQKLFEIRKRKAYERLQDQARMVH
Ga0209348_10484794F011410GAGGMKDFKIKLEWYTSNTLTWIVFLVAAGLMIVNIVTMINMYSVIETMWHEIVQVKETNSYLYQFIEEHRNDFN
Ga0209348_10484795F000720AGGAGMTLIKETKGVRKEIPSRMMCATFAIPIDGRKVTGTLDYTVSDTGVTPMAFWIKIKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNIIGHMANYLHKNMEDIILGKKPDKKQRMLSTDPYAMKE

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