Scaffold Ga0209348_1042942

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1042942
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1560
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035330	Metagenome / Metatranscriptome	172	Y
F067815	Metagenome	125	Y
F094526	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10429422	F035330	AGGA	MLNKGTKFFVTWTPHYINGEENFRGQSISRKGTWDEKSKIGINKKTGKRYMTFWDRDRERYTTANSDIVSITFNIFQKGAK
Ga0209348_10429423	F067815	N/A	MKGEIKMENTHSTFLVLKIRETKSNGETDISVDSSFDSFTDAKNYKEAKDCIERLTPFEHWVVSYKIQQIFYKSFVQTEKKSWKDLISV
Ga0209348_10429425	F094526	GGA	MAECKKYFRQKKGQWIYIWDNETRRNKKVCLQDLLDRINHTLRHENKIYFATTYDRDIYKVEGCIMEHKNMN