NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1042267

Scaffold Ga0209348_1042267


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1042267 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1576
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009691Metagenome / Metatranscriptome314Y
F013094Metagenome / Metatranscriptome274Y
F018383Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10422674F009691AGGAGMKSELNSKDYVTFARRFVKDLVEDMEIEELRSIVSDRIHEEIQEQEDTFGQEGAFEEMMGWSEDIFLSVAEDFELEFEGV
Ga0209348_10422675F013094AGGAGMITAFFTGVIVAIPTSLVAMKLLNSSLFIDNQELRHINEKISILIHQLDDYRDERLAEKMEELGIADKPEVTG
Ga0209348_10422676F018383GAGGMEKITFNNEQLEFLKFIVQDFEYNDDHEKYMIEQIENKIYSAQENQALRVLHGLE

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