Scaffold Ga0209348_1040936

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1040936
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1608
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F085551	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10409362	F029713	AGG	MSKKYDHEKELKAAKRAEIERIWFAQEATNKELLEAYKALDIKEPN
Ga0209348_10409363	F036656	N/A	MKLCSNQSIPVQYLKGACIFLSEEDEGRYIKDVCVDLEKHSIILVDDNGDGMYWESLRNASIQFQGGR
Ga0209348_10409364	F033766	AGGGGG	VSDYPYNLTAIATHLRELAQSIAKKLDISEEDAWDLCIEKLEHKYSLMTREDDQ
Ga0209348_10409365	F085551	GGAGG	MSYSIRTRLHHWIEQCPCTNFLVKNKKEQEQVDGIWYDVVVVECLVKAEQQQ