Scaffold Ga0209348_1040127

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1040127
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1628
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10401272	F006383	GGAGG	MLIKDKMWKVQQPGTILRARHSARRGQLALVLTKAYHEIRGTETRGNHYVKMQMISTGERIEESLTNANNCWDIVSEP
Ga0209348_10401273	F021674	GAGG	MERETYNSRLKSNPEDIPVGSLLRVKKHCRKNNIIKENGEFAILVERDGGKYISHDVLYPTGRRTVFIPINWEVVSYANQR
Ga0209348_10401274	F069451	GGAGG	VKPGDLVRIRKSAITAYSTLWFIDLADNKAPLLLMEQLNRRHWKVMKPDGNTFFVEEENLTKRMW
Ga0209348_10401276	F006867	AGGAG	MLQDKEQRKLHESIQKRCRIQPGMLVKSSHEDVIDKLALVVKVSPACSFDRDYEGAEEHIFYVCEPFDGSPSFVDYVCNLEQVS