Scaffold Ga0209348_1039588

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1039588
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1641
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10395881	F005547	N/A	FSSVHFTQKGCALACIADVLDFHGVDSAEEALRVMNDCNTYRDTDGEQTEPFEWDFEKMKEMSSNDLWKVFADWTEISWERMSDRSYHIDAQPMEIQA
Ga0209348_10395882	F010950	GGAG	MMNIWVVRQTCLYDQESYVTSHLTEKGALITAIKTVREDLCDGFDEDELEDMRPGLPHNPEEDLMQYNSEQLRGIVQDWWEYSFDINEQAQYQIYETQVEA
Ga0209348_10395883	F018286	AGGTGG	VTVLTTFILLGMVDSHDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGKVFYVVKLHDNKDAVIICQEDAKSGRESERVD
Ga0209348_10395884	F079212	GAGG	VDENQKELIDRCIESHYNMIRYHRRAIIELSRKMLKEPEICMECFDIEIKNESR