NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1034849

Scaffold Ga0209348_1034849


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1034849 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007475Metagenome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10348494F007475N/ASGVNITVDFENHNLNKNDKIQLNFTSGNAISGEYTISDVPNPNSFVVIYPFDETTSGYVTVENLKKHEYVGAWLLEPNDKPIGQGLEAWERSWKKEQEKLRESAEIFALYNRSTKWEGNKEIIGNFNNKQNVANFDPSVVAMTLTDSLKRDAQGGLDRSGRSLNTTNRMIAMVNKLFNKSPTVLDDIKFGIINKPLIEFTDIFESGLINAGDYINGELVDSAVNTSNLDASTYNPNTDQDTVVDAGLYINVE

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