Scaffold Ga0209348_1034093

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1034093
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1807
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10340932	F001993	GGA	MNAEQLRYKMKFLDELCPNRKVTDDEEFYELYSKFRDVIEDTDYNIDIVDCLTALHCAMEDYEMYA
Ga0209348_10340933	F014388	GGAG	MSSLHHENILEDCFEVAMESFRINNKLTHEQLDELITISEGTYNAICKQSYKLFQDRCQ
Ga0209348_10340934	F004453	N/A	MLIDFTEIELETIANAMDDYINYDDEKLDTESLFGGLSVADRVNSIQTKIDNVINWS