Scaffold Ga0209348_1032864

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1032864
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1849
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F030886	Metagenome	184	Y
F041168	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10328643	F041168	N/A	MKQAKVRKHTVGFFRNDAEVPFINLEMFETIKDATGIPHYWRDRDGNVSQFWHSGVIPKGTGVMCQHRERGMKHTFWTVTDPESELVGKVFVIGHTFKDRKEDEFEKFEYSNISPTLKYSILAEKPLTK
Ga0209348_10328646	F030886	AGGA	MGYHDRKPPDYERTGIGVVNPLIRIEKKLKKVQEILDNISDSSVLTATDLKIKIEQVLAE
Ga0209348_10328648	F004771	GGGGG	MKKRVRIGDLVTMYTHDTGLIGVVIDRKPVAISTTPAQLCIKWFNSGGGVEWEPEGWLEVVSEGR