Scaffold Ga0209348_1032732

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1032732
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1854
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022555	Metagenome	214	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10327321	F059941	GGA	MKLGTLVQFAAYGAVMDTGYISSHDEDPEFMWVECVKMGPQRVRKDHTLLEVISETR
Ga0209348_10327322	F063682	GGAGG	VKPGDLVRIRKTSIDHMSSNWFIWHAEKMTPLVLIEELNKSYWNVLKPDGDTVFIHKSHLTKRMY
Ga0209348_10327323	F015346	GAG	MEHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGSHESKQYPVRYLVEL
Ga0209348_10327324	F006383	GGAGG	MLDSTDKMWAVQQPGTLLRGRSSHHYGRLALVLEKAYAGPTPSNGYPPRKYVKMQWVATGERFEEMLVNAHNCFDIVSSHDTLGPEEN
Ga0209348_10327325	F022555	AGGAG	MAIAPKFKPGQLVKYNHPANPLVGWVKSVKDYSVGPTLVLVQWCGKYRQQEEYIYQRDLKLVEAV