Scaffold Ga0209348_1030864

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1030864
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1924
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020716	Metagenome	222	Y
F027868	Metagenome / Metatranscriptome	193	Y
F062836	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10308642	F027868	AGGA	MDYLALRIPADIKQSITAHTVTDQPEPEDGGCYPFGGENGAYKLCNTDMLQIVPAAYTDVKRNHHLEGDLYCDEEGLMKNSPHNWRASQMRYWHMLPQKDQLIDNWRDWCHVVGDACFVVPATQENLKMMESILDS
Ga0209348_10308645	F020716	GAGG	MSTARFCKNCGKKYYPKGYYSYPQFNWGTSDEDKLEFARFHSLWCMTEWLNKNKQAFAELVDNISQNVIEDNQTINQ
Ga0209348_10308646	F062836	AGGA	MEKIRLNEQKRRLLKKEWSHTVYNNMPMQVEEDLRLAQENYRSVRSDVWDNVITPQVEKHYPMADMKILKKYDTGRSYDRFTTTD