Scaffold Ga0209348_1026387

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1026387
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2120
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012041	Metagenome	284	Y
F034750	Metagenome	174	Y
F047109	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10263871	F034750	N/A	MSIEKLEIEIKKDTPKRPKKDNSKKGDIFLNCRCCGVLIRPDWYSRIDQRYCQDCL
Ga0209348_10263875	F012041	AGAAGG	MKKYRVSLEVDKEWVKNFDLTFDAVDEQDAEAQAIIEVKQNLNDYITAYADEEGDK
Ga0209348_10263876	F047109	AGGGGG	VKNYKVIGGYTVYEQYEINVQAKDSKDAIKKAEKIPVEKWDELQNSNDGSGFVIDDVWED