Scaffold Ga0209348_1023725

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1023725
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2266
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10237252	F009812	N/A	MMEEFEIDWIPEDTGAPYEADDVFLDIPAHTIDKLCKVKFGHTNWARMGQMSPEDLVGNPCEFDYENGVIFFKNAHMV
Ga0209348_10237253	F000720	AGGAG	MTLIKENKVRREIPNRMMSATFALPIDGRRVVGILDYTASESGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGKQPDKKQRELSTDPYAMKE
Ga0209348_10237254	F011410	AGG	MKDLKIKLEWYTSNLLVWVILAISLGLMIVNIVTMANMYSVIETMWLEIQQVKETNVSLYQFIEEHRNDFD
Ga0209348_10237256	F003020	AGGA	MPDISKFKSVSVSTDTHSKLLSLAQNRFEVPVSVQKVIEFLLEKELKKKKNGRSNGKSRG