Scaffold Ga0209348_1023032

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1023032
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2306
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004322	Metagenome / Metatranscriptome	443	N
F020817	Metagenome	222	Y
F034750	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10230322	F020817	AGGA	MIYLILKERHYSNIENSYDIVASSKDIDVINDKLKGYQLINDDKNETYSIVRYESPLLLTEEVA
Ga0209348_10230323	F004322	GAGG	MTKSTYPTKYQLEHLKKRINSEIDPLIDQARLSVKSIVADLTETAELKLAKKIKADVVIKELEDAIANLEIKQRKAQTFFGKIKDPELKDKLSYKFDKKDRDSYYRSSYNKGIEPSDCRDQLREWAQYLAQKEAEKTPEGAKVKELELYKQSAINSVFECGVPEQLNIVLEKVLNGVGIVWNKTKALQLENKGYN
Ga0209348_10230324	F034750	GGA	MHNYHIMSNEKIINETIPIIDIKEANRTKRPKKDNSKKGDVFLNCRYCGVLIRPDWYSRIDQRYCADCL