Scaffold Ga0209348_1020439

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1020439
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2484
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030052	Metagenome	186	Y
F039092	Metagenome	164	Y
F059877	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10204395	F059877	N/A	MNSKFIATAVAATLALTSCEKTDYDVQFDRDTHVKIMSDNSVSTYAVSSCTGKDTSFTVDFGVAMCINVANLPGIDDVRYDEYEFYAMLDGRKVKGFQNLKDQVGKLSQGIIEGNINMQLSGHDDLAVYLLHENMYKAQFFVENSDGQIFELQLKEVY
Ga0209348_10204396	F039092	GAG	MVVITPKRTSCMINIVNNMTVTIKQIGKTYKVSDDNTVKVTHDHDAVVSVCGEYYKNKYTGEWLSELEAEQAMIDKYEEDESNKYY
Ga0209348_10204397	F030052	N/A	MDNNNDMKIKLKELEALLVSHDWYYMMSDDNYWYKQGRKSFELITKLMFELKDGGYYTEANELYDKYSK