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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025127 Open in IMG/M |
| Scaffold ID | Ga0209348_1020265 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2496 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003976 | Metagenome / Metatranscriptome | 459 | Y |
| F004856 | Metagenome / Metatranscriptome | 421 | Y |
| F010571 | Metagenome | 302 | Y |
| F031261 | Metagenome | 183 | Y |
| F038195 | Metagenome | 166 | Y |
| F047975 | Metagenome / Metatranscriptome | 149 | Y |
| F059441 | Metagenome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209348_10202651 | F004856 | AGGAGG | MSDWIEGTKPKIIEARYSAYLSWDLEELGIDWDDIEDWDLSRADLEITFKDGTKKTYENWQDLDVDYKHNFEEVLILDENWNQVEGLN |
| Ga0209348_10202652 | F031261 | AGGAGG | MTRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRKNPDYNRRTIPFCPLDKAVKWDVYIYQGGR |
| Ga0209348_10202653 | F003976 | GGAGG | MSRTYNDYYFEKLDILDTLDKLDMSVRLLNVWVNEPMGLENAKYVLEKNANQEFNWFSRDMVKELVEEEVR |
| Ga0209348_10202654 | F059441 | GGAGG | MKTWSSTIKYTVFDMGRECETEEEYKEWVKETFIENHDIYLTDNEITNIQREELYNE |
| Ga0209348_10202655 | F010571 | GAGG | MSMNTRQAIYTENLYEGFYEKHYKKLSKTSDDVEWIEKEASRLAEIDLDNFEMEG |
| Ga0209348_10202656 | F047975 | AGGAGG | MSMTKEEWAENTVDDMEWKDLARIVYDVMLDSVKDMSDKEFKEYLIECGYDEELI |
| Ga0209348_10202658 | F038195 | GGAGG | MKRHKDYYEYKTISFHFFKKVANKNEFKKEWVSVRCQEDIMKQQPQNVEIRRLKKNV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |