Scaffold Ga0209348_1019162

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1019162
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2582
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F025414	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10191624	F009562	AGGAG	MLAIPLIRTDDDTNVTPIERTTIACEQIITALMMQGTLMDPNVTPQEIETFTTLSVATIIPAEA
Ga0209348_10191626	F008590	GGAG	MQIGDLVTYWHQRGRWRKGQSVHVGLVIETGKYTGNRDVKVLWTNEPEPLTECSQHLALVDDSLTT
Ga0209348_10191629	F025414	AGG	MKVGSLVRETVDNNIGIILAWESDGWLVRFLEYDAIFHMPPSLLELVDDNSPDISLTN