Scaffold Ga0209348_1015287

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1015287
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2966
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales → Thermodesulfovibrionaceae → Thermodesulfovibrio (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016882	Metagenome / Metatranscriptome	244	Y
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N
F105900	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10152872	F016882	N/A	MAYYVSRVKIATDTPKGVKWLNERYLINAVSVGHAEQLVHEDFKDSGIQFEVKSVSSSPICKVIGTTKKI
Ga0209348_10152873	F057678	N/A	MVEYEVNDKVVFRFNDVNEVAVVTNVRRHKNIVTGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDSKLTAAWIGSDSESNLFAKENVGHTRQNFTKDMTLLLDGEGPGGVQHFERHNDLIFPTQGPRSF
Ga0209348_10152874	F061281	N/A	MDKFKKRVLKQFPNAYVESSADGLRIINNDEYLAKEFYMPATTCEDKAWEYAALACKLTQNFNRAHPSRMDLGDVENKLARINRRKRNGRRVK
Ga0209348_10152876	F105900	N/A	MGRVNNAYAYDKKRSRRMGRLYSTIDFNVNDKISGELFASVPEKPIVGELEIGGKSFKMTYQEIDAVISTLQDAKRAVEMKYRLGRMNR