Scaffold Ga0209348_1012837

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1012837
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3289
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Cyanophage P-RSM6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024809	Metagenome	204	Y
F038719	Metagenome	165	Y
F058913	Metagenome	134	Y
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_101283710	F058913	AGGAGG	MKLTKEEARWLDSKWNDFYYYFQVEDMYIKDQEIYKAIGQKLSEVKQ
Ga0209348_10128373	F024809	GGA	MNYSQKVLFDDWISRCPIEGVFVDEPVSQVQMDDGRVGYLVKVFLTIDKEDWEQNQSPPGFSENLPSQNGLQGR
Ga0209348_10128374	F038719	GGAG	MDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDQYQFGVTKKIINDRAPKANSTDMWN
Ga0209348_10128378	F080142	AGGAGG	MKVGAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEFRNEIWSYDDALNKIKNLVQQQEQN