Scaffold Ga0209348_1012327

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1012327
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3371
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021207	Metagenome	220	Y
F024676	Metagenome	205	Y
F054940	Metagenome	139	Y
F095588	Metagenome	105	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_101232710	F095588	AGGAGG	MKYKVEIELDFNRRPSKKNVLDRLFDMLRDNKVNYKLHKYNNSLYEKVERSIKNDKYK
Ga0209348_101232711	F024676	GGA	MYNKTNAKKQMFVIAMPYPKNKELPDILEEEDGQVMYFKRKKDAVTFLQNLYDERNIHIQALIDDNIEIMRVQ
Ga0209348_101232713	F054940	GAG	MNLLQAELKELIKERYYEYLEEGFESFEAMELAKRDIEERAESDIGAYKKLYNSSFEID
Ga0209348_10123272	F105336	AGGAG	VKLRQQQINKIEQLLDALEEKLEQMEQQDYMSFDLGKDLQAVSFMLDKIREEIENE
Ga0209348_10123273	F021207	AGGAG	MSKRFKQVNVQHFATLVQDIDVSKYTQKEYVEIVEELYMSIFRHNTSGDFVVETLPNEKGNWKVHKPSATKEEVMELIKQGKVIWDKNVI