Scaffold Ga0209348_1012312

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1012312
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3374
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036270	Metagenome	170	Y
F038719	Metagenome	165	Y
F062820	Metagenome / Metatranscriptome	130	N
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_101231211	F080142	GGAG	MMKVGAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEFHNEVWSYNDALQKIKNLVKLQEQ
Ga0209348_101231214	F038719	AGGAGG	MDLKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDQYQFGVTRKIINDRAPKATNNDMWS
Ga0209348_10123124	F062820	GAGG	MTTSTWKHIDIGSICVHCGKDTAFGHSDMLFVDRIPADADLLDDDGNTIGTKEGYACRECIYVDEDDFFHEDNVSN
Ga0209348_10123126	F036270	AGGAGG	MHIESTDKQGVFKACKEGHKLLELINDMGWDYDRFSSSGQDTYDKICVILGTVEEEK