Scaffold Ga0209348_1012277

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1012277
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3381
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018189	Metagenome	236	Y
F023878	Metagenome / Metatranscriptome	208	Y
F080142	Metagenome	115	Y
F089953	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_101227710	F018189	GGAGG	MELSKEQMEKVILELESNYNSKTFDDENLIEIINLFKNYLNSGETK
Ga0209348_101227711	F023878	GGAG	MIELFIIIGGCYALYVCGMAIATELDYREVNRHKRRKIK
Ga0209348_10122772	F089953	GGAGG	MEDLINEEILENIHAGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNNMSFFPTLEDANQALSEIVQKRFEEQAQ
Ga0209348_10122777	F080142	GGAGG	MKVGAGEFIKTDSGEVIWGSEAFIDEVFKALYGNEYEYEIWSYNDALQKIKNLVQLQEQN