NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1012277

Scaffold Ga0209348_1012277


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1012277 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3381
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018189Metagenome236Y
F023878Metagenome / Metatranscriptome208Y
F080142Metagenome115Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_101227710F018189GGAGGMELSKEQMEKVILELESNYNSKTFDDENLIEIINLFKNYLNSGETK
Ga0209348_101227711F023878GGAGMIELFIIIGGCYALYVCGMAIATELDYREVNRHKRRKIK
Ga0209348_10122772F089953GGAGGMEDLINEEILENIHAGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNNMSFFPTLEDANQALSEIVQKRFEEQAQ
Ga0209348_10122777F080142GGAGGMKVGAGEFIKTDSGEVIWGSEAFIDEVFKALYGNEYEYEIWSYNDALQKIKNLVQLQEQN

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