Scaffold Ga0209348_1011716

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1011716
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3475
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F018189	Metagenome	236	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10117164	F018189	AGGAGG	MELTKEQMEKVIYELECNYNSKIFDDENLIEIINLFKNYLNKGETK
Ga0209348_10117166	F037769	GAGG	MSYKQTEGDKADEKLLRRLLTEKMSEEDANKIISHVFSDIIKWTYDDAIFQLTQIFSFTNEECDRLIKEYDIVNFTEGVLMNPAPNFNATAPNDVKDYSANLWQARKHISDAKKLINATALTPRDYKNQDDFQDAIVQRMHLQEQFLNINKYIDEHLDYAKNYQPQ
Ga0209348_10117167	F012584	N/A	MKLKPTLPENTFLLNEDSLPTTSDADPYGKVMVFRKDVGWTVIPLTDAVQFLAMKHTHWTFTPEKP
Ga0209348_10117169	F006793	AGAAG	MTTYRSTNEEKQQRINFAADELAKGKRAMDISKKLAKKYNVSIQQARDYVRQAKPVLTESISPNDRAFIFSKVMNCLEQDRLDARDQENLKEQTRSTGGMVKMVSLLTTIDQVGCWDDAHDSYLFKNFSEAKKKVKHSDLDALDRDFTDCDLTDTEEPF