Scaffold Ga0209348_1011277

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1011277
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3564
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10112774	F012581	AGGAG	VTKYTLYAKKVYYYRKDINAQDMKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESEDEL
Ga0209348_10112775	F013187	AGGAGG	MPTKAYKKKPKKPTWVWVYGDEMPEVWEHFGFTNPDPDDRMKLKFIKYESKEMQRD
Ga0209348_10112776	F105326	AGGA	MGQERNLTPTQHWEMHQGLWHMLGCDMQLKHKDKTTAIYVDNKARLKYTYSTKGFIKWFPMPKEDKDANKSL
Ga0209348_10112777	F021207	AGGAG	MSKRFKQVNVQHFATLVQEIDISKYTQKEYVEIVEELYMGIFRHNTNGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVVWDKNVI