Scaffold Ga0209348_1009736

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1009736
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3886
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F005670	Metagenome / Metatranscriptome	393	Y
F014388	Metagenome / Metatranscriptome	263	N
F018197	Metagenome	236	Y
F023877	Metagenome / Metatranscriptome	208	Y
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10097361	F018197	N/A	MNTELPKETNIKEWTNMPPISEELYNELVKEFNNERLYFFNDSYNLED
Ga0209348_100973612	F023877	AGGAGG	MTTKQLIQEYVSDHYNTFGFYPYDVEVDGMIFSYGNYWAILNDERFD
Ga0209348_100973613	F049045	GGAGG	MTVSELIETLLDYDGDEKITFYYLKDNVLTNCQIEDVNSYGMGIEFTIQDTSEYFEEAV
Ga0209348_10097362	F005670	N/A	MKLLTRQEYNLILRSLDYYDTFMTKRDKEIREDLEDKLYYNLYNPKDGVAQTKVNLPALYDIKTEKDLSL
Ga0209348_10097365	F001993	N/A	MNSEELRYKMKHLGVLCPNRSVANDEQFYELYSKFKDVIEDTEYNIDIVDCLTALHCAMEDFEMYE
Ga0209348_10097367	F014388	GGAGG	MSSLHHENILEDCFEVSMESFRINNKLTHEQLDELITISKGTYDAICKNAYELFQDRCI