Scaffold Ga0209348_1009416

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209348_1009416

Scaffold Ga0209348_1009416

Overview

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1009416 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3970
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008624	Metagenome / Metatranscriptome	330	Y
F008889	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100941611	F008889	GGAG	MTYTTEEFEKDVAGLRALIKMCDDLEKDRHMKEDALIKQINGENAFFWRAN
Ga0209348_10094165	F008624	N/A	MNPQAHRSTEELKTIVKALSKLRLLNTPAEDQRLFECEQELRKRKREDDFINAHFQVITY

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