Scaffold Ga0209348_1008568

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1008568
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4185
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024809	Metagenome	204	Y
F036270	Metagenome	170	Y
F038719	Metagenome	165	Y
F062820	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100856813	F038719	AGGAGG	MDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKAHDDLDQYQFGVTKKIMNDASARQSNDMWG
Ga0209348_100856816	F024809	AGGAGG	LNYSQKVLFDDWISRCPIEGVFVDEPVSEVQMDDGRVGYLVKVFLTIDKEDWEQNQSPPGISENFEKS
Ga0209348_10085685	F062820	AGGAG	MTTSTWKHIDVGSLCVHCGRDTAFGHSDMLFVDRIPCDTDLLDDDGKPIGTKEGYACRECIYVDEDDFFHINNLID
Ga0209348_10085687	F036270	GGAGG	MYIESTNKQGTFKGDEQGHKLLSLIDDMGWDYDRFSSSGQETYDKICTILATVEEDKDET