Scaffold Ga0209348_1008331

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1008331
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4257
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005611	Metagenome	395	Y
F035960	Metagenome	171	Y
F089521	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100833111	F089521	AGGA	MKYMIINKWQLKDCKPNYYLKEVVDTLEIANAKLKAYQTIEEDKNDNYYIVPFNEEALLLTEEVA
Ga0209348_10083313	F005611	AGAAGG	MKTYKVTAGETIYAVYETEIKAKNKKEAKKIASEISAYDYKSNDWSNSAGDFAIEEIEEV
Ga0209348_10083316	F035960	AGG	MKINEWGVFVERPDTSTYEIKLSEELASKVCDYIEKLKEDDENILSGNTEGKILW