Scaffold Ga0209348_1007975

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1007975
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4373
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F019311	Metagenome	230	Y
F062710	Metagenome	130	N
F066824	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100797510	F002594	N/A	MAKIPTTRLNSAPREYNEIDFDQLIEDLQDMIKILNSTYPADIQIEQDRKEFFLSG
Ga0209348_100797512	F066824	N/A	MLVHFKFYRCGYYAEGLVKHDNLDSASQALWKEHPKTFKWQDIQGPENENRLTVEEWNEPSGTKTEPEAEPRGTMGL
Ga0209348_100797514	F019311	N/A	MNFTFKHPSKYKKFKLVPIKQCKVGKKYRFEKHEHTVMDYDYNYSYMTGTCVTNQKTKDDHLIEIKLDFPRKELQGEYDNKLMFYFPHDEQYEDVKVVDYE
Ga0209348_10079756	F062710	GAG	MATTVNKKIKVKFKITIPAEKEFKIIDEKMWLENKNDFVAAANDEDGQQILASDYVEMYGLSPVDNSYFEDDPNREVDSIEKIIDENGKSI
Ga0209348_10079757	F004220	AGGAG	MVEKDKLDWCYYFNSIDRWIRVCTKDMNEGFSVFTKQTRVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKENGKWLQL