Scaffold Ga0209348_1007502

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1007502
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4530
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F033839	Metagenome	176	N
F038198	Metagenome	166	Y
F043451	Metagenome	156	N
F067840	Metagenome	125	N
F073669	Metagenome	120	N
F077401	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100750211	F013777	GAG	MSKTITMWGPTSIDHFKNLHDHYLKKNSIVHVYAEPLLYLKRDNDENKWYYRMLREKELVYKPFKSYIHPEGDFKNGYGDFCSIQKGTFDYDNMNLGEVFPAILYAHHETMLTVGCVVKMSDHPDIHGKEQLALWIYYPSAENIESFDTASGHIYKD
Ga0209348_100750212	F077401	N/A	MTMKTFWAWKHDINSTHKNMSGYTKILARDISSARRKAQKHYKYHMFNSNFNVSIMSGETDEHGYAKECEYSTGQWTRKAWSAYNYFHDLEPDMQERVYNHCENNNDDWRSKSKAELQVIVRALSNV
Ga0209348_100750213	F033839	N/A	MNNMSPITRAFLTVGIGVFIGILPVFMIINTLSTTAIKLCGRYGPDYTIVNLDTPLGTIKRCVAKD
Ga0209348_100750214	F043451	N/A	MPNIQPWLYPNNPFSVDRVVYTPTLSAHILEYQEEMIDAEGNIYWKTVDSTTFGGSTSVKEFLEQMKDYYESRSLERIKHSFDNPEYYE
Ga0209348_10075022	F067840	N/A	MVKKFSKRYRQTKQAIYTAYDIISLIVILLSFDKLLTSKSRSVEPRQVARLIEKLPKIKKILYDSAPWWAFDDMDVKSK
Ga0209348_10075024	F073669	N/A	MTEPNMKLLEAMRTEANLCYERGDDEDGNALVKSIFDQIFPGLVEEAKRNPAIIYTLIIHSNTEKDQTKADHFRSILKYLKDNGVKF
Ga0209348_10075028	F038198	N/A	MTPEKVTLKNVKVTINFDIDLDTLRRFLETKEADKDDVMAIYDMICTQSDRLNEQGEPENIRAYFDIHPETFILLEQQVKSDLKKSYVTDSDHPHLRRIK