Scaffold Ga0209348_1006616

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1006616
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4880
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F011658	Metagenome / Metatranscriptome	288	Y
F014834	Metagenome / Metatranscriptome	259	Y
F070651	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10066161	F070651	N/A	MKITIVQTGKTYVDQGDEVKVIHNHDSIIKIAGEYYKNVKTNEWISEDEYYDSLCLKMEEDQSNKYY
Ga0209348_100661611	F011658	N/A	METLWQQLKPEIKQSLSEQEEIYPTLVKDIKCALQENYLWSHLSIGQARDLVGFSDISLGSMSSYDWSFGEKFLICED
Ga0209348_10066167	F014834	N/A	MKDTNEIEKQLKRKADKYIEQKANEMYAIHQEIAEFTGTSTNFIDYITHFNNYDSAAPENKGNHTAYCDAHQTKKKYRLELEMNYKKRLVAKYTKELLTKLDIFE
Ga0209348_10066168	F004523	GGA	MSTEIRSAREAMTIFKILGIKEVTTMRQRKNGTQVFELPIRQMWQTLNPEPIRFACYKSGYVRNVSPSNSSAYQINQTKIVPSGYKDWTRTERKLIPSWEERLIYLAKFIIKNYYQKPTYLISDYAIKCLKEAYYEQNKTGLPFNEVPWNTVSPADDVQVIINGHRYNLS