Scaffold Ga0209348_1006286

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1006286
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5030
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009067	Metagenome	323	N
F018831	Metagenome / Metatranscriptome	233	Y
F018932	Metagenome / Metatranscriptome	232	Y
F031501	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100628611	F018932	N/A	LKIKRATKHQEIYKRTKNGLELVLPKKIKTDIGFQLMFGYREDKRIEQKRLQENNDRYLTRTYLNIEDFKKYI
Ga0209348_100628612	F018831	N/A	MKIIASVSIEIDVKDTELLDDAKDRAIEKLVDTMDEWLSSNGIPPIISIEYKLPEYDDKDFIN
Ga0209348_100628615	F031501	N/A	MTKELLDLFDEAKRIIDKQETLIKMQQSLIKTMQQGLQGVEVNELLLKKQLADLQEELQAITKDYVDVIGGGEKV
Ga0209348_10062866	F009067	N/A	MKNKTKQVWYLYANNIQELKKQCYDIISTLYVQLGQSPEAEIVVQMTNVFTNDLANDYGSMELDEVRYALNKHIRNNDGPHFVNVPMWSKALRDYKKTKALKRQTNQLEEYEIYKKRISSFKNAIDKREIKKIGK