Scaffold Ga0209348_1006230

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1006230
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5060
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F012583	Metagenome / Metatranscriptome	279	Y
F013094	Metagenome / Metatranscriptome	274	Y
F029784	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100623015	F013094	GGAGG	MISAFFTGVAVAIPTSLIMMKLLNSSLFINNSELADLNQKISVVINQIDEYREERREERENFLNVSNDTK
Ga0209348_100623019	F012583	AGGAGG	MSLSEQVKVQAFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDTETFNDVVIGVIEKLTERLNHE
Ga0209348_10062307	F029784	AGGAG	MCSQIYAHPVEGYKCFANANKSQGTYYTCCDLDTREIKYVTYIYDGYFMGYYLVQSATKVTENYANCQGKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK
Ga0209348_10062309	F001504	AGGAG	MSYDTEHYYALHTFLEDDELHGIWNIVERAMNRHGFDVSNSELSMRLYDQELDENIEHDMENLL