Basic Information | |
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Taxon OID | 3300025127 Open in IMG/M |
Scaffold ID | Ga0209348_1005636 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5389 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020003 | Metagenome | 226 | Y |
F020459 | Metagenome | 224 | N |
F089519 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209348_100563610 | F020003 | GAGG | MSTKLNGTRYSPAGSRVPTELLPTAIRYERARAVVFEQLGQFSRANECARLKRYYEQRAMEECAQA |
Ga0209348_10056362 | F020459 | N/A | VKVYECQPVADNNTEERKTSVGDDESKRWRKGRGAAHKVEERAQVCYGYILEGGTRHQIAEKVASRFNVSMRTAHEDYRRAMELLRTEQTGTREELLNQLQALRLATVQRALKRGHFQTVATLLGDMGRVIGEAAPEQLALQVPELSIQIEDKNTPAK |
Ga0209348_10056366 | F089519 | GGA | MATQVEIQHRLSYARAMLERGVPVASLATLLSARYFVSRSTAYTDITAAEQEIQQSDDGPAFEEMEPCNPAGVLAMLQHRLEIAIATGDDKQTCQLIKAMDTAKKWQGYNTQSVSPFA |
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