Scaffold Ga0209348_1005348

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1005348
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5557
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025520	Metagenome	201	Y
F062820	Metagenome / Metatranscriptome	130	N
F088743	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100534813	F062820	GAG	MRDSSKKIRGGMQMTTSTWKHINIGDICVHCGKNTGYGHPDMLFVDRIPADADLLDDDQNPIGVKEGFMCRECQYVPEDDFFHEDNVND
Ga0209348_10053486	F088743	N/A	MKITDHEHAYLNALVLAITAPTEEQSLECQKIAASIEPHLTKKQIDLCKKGIEVCMELL
Ga0209348_10053488	F025520	N/A	MTFDEKFFIINSTSYIAEVKQTLCNEFLKELKNSDDTLKPHVSDLNTNFTYCGKPAIRCILPTCFIEIEYKTSDGHYLISREVFLYEEDYPTYADLVAYKEKLAYGFGSQVTQETKDIVEAFHNGYGCECLSSGDY