NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1005227

Scaffold Ga0209348_1005227


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1005227 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5628
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F013897Metagenome / Metatranscriptome267Y
F025518Metagenome / Metatranscriptome201Y
F039683Metagenome / Metatranscriptome163N
F049033Metagenome / Metatranscriptome147Y
F099446Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10052271F039683AGGAGGMNYDEILKCYEGVTEQHANTSFEFGLMNETYWCLFREHDLLEYASPITGTH
Ga0209348_100522712F025518GGAGMSDKLFHNSKTSLSEESKLYLPTVKEFYPHLDDMLTDRIAKYCALYSKGTDKASIRQAINDFEEVFDTELTS
Ga0209348_100522714F049033AGGAGMSYTNNELALLDLISNINKTFSYIGEDGDDVDQFEIDQLHKYVNQFASKVTISDSQGE
Ga0209348_100522715F013897AGGAGGMNVSLSKDQLLELINTIDYATDNRYDYEKYTIIRSGTFDLEPIREVLYNEYVNKGDS
Ga0209348_100522718F001479AGGAGMTKEMLFLCDVYDRWLDENELPHRSADDILYGQNAMALTSNQKYWLESFIATWEVIAEHC
Ga0209348_10052277F099446AGCAGMTATFVKELYNEALVYSSVVFGMGFWIDDQGLFISAPEFKDGSLDIDNAVPVYDWENFDELSAHHLSHLMHVNQMCILKRDSQQLDYYAGVFGNA
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