Scaffold Ga0209348_1004685

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1004685
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5989
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F007401	Metagenome	352	Y
F033764	Metagenome	176	Y
F100990	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10046851	F007401	N/A	QRDLLDTILASRTNQFERIENMKIMDSIYFKKKLPENVVLFPLQRIKRYVHRTTKEPNKKNL
Ga0209348_10046854	F033764	AGGAG	MHIDKYVVNNIGTKWTKGKDKKNQLLDSLDGNDGIQLKKLVPLLEQWFETVTGGWSDKKVELIINVKEEDR
Ga0209348_10046855	F100990	AGGAGG	VGKNYDYTYIFDGVYPLTEYTPLPMTEQMFWSRVGWLQQAMLRADNFEFRLLWFNKLQELMRLQP
Ga0209348_10046859	F000479	AGGA	MSKAVNILEVLEKAHQSPDKISDRNKRAIVDAYGRALTMKKVLDDFIKVNRNLITDMGMILHGKDYTIHVSEKLSVKVDSNLVKEKLGEVEYHKCKVPTQYKTIQALPNEESTVKRNRKATIEEVADFRITA