Scaffold Ga0209348_1004391

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1004391
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6243
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F023451	Metagenome	210	Y
F031532	Metagenome	182	N
F058920	Metagenome	134	N
F085566	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10043914	F023451	N/A	MKNQKWIGFKKPKFIGIDFDCKGNPLIEWQEALKLKIDRDTIGYDFKVVAYKKVQSCMEE
Ga0209348_10043916	F001086	AGGAGG	MKHKCTGWAIVATMERPDGTWYDETITDIDDDTASSVDSFLTEYCEEKERDKHE
Ga0209348_10043917	F058920	AGGAG	MSNCYDHSIKKDIMDSYCWNSKEEAKANVLQNYKQLRQWYERECEKYKRPLGGDESFDKWYEEYTGGTWEENNE
Ga0209348_10043918	F031532	AGGTGG	LINGTRNTLVEHGRKTMSDRVTKKKIKTFLTLRFRKEPMMMYDNTLDVAIEVIQDFLNCDPMDIGKLQSNTYNTIYNIEREIDDTI
Ga0209348_10043919	F085566	GGA	MIPYEIGKQLIDKIERELGGKANGHEEYLEGMGTQFSFDLNGKSYSVDLWDESILDLHNQ