Scaffold Ga0209348_1004057

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1004057
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6530
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F016059	Metagenome	250	Y
F089521	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100405712	F002281	GAGG	MKINYPKVAEHLGVKLRGDETFDELLKIEQQVKEYNERKARIAEENANIQRVDAQTRGVKKW
Ga0209348_10040572	F016059	AGG	MKKYKITAGQTIYATYEIEVDAKNKQQAEKIALATSVNDWDEERFENYDALSIDEIAEVR
Ga0209348_10040579	F089521	N/A	MKYIIINKWQLKDSNCKPNYYLKEVVDTLEIANAKLKAYQIIETDKNDNYFIVPFNENALLLTEEVA