Scaffold Ga0209348_1003732

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1003732
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6839
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024809	Metagenome	204	Y
F025520	Metagenome	201	Y
F038719	Metagenome	165	Y
F058913	Metagenome	134	Y
F062820	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100373213	F062820	GAGG	MTTSTWKHIDMGSICVHCGKDTAFGHSDMLFVDRISADTDLLDDDGKPIGTKEGYMCRECQFVDDDDFFHINNLID
Ga0209348_100373217	F058913	AGGAGG	MKLTKEEARWLDDKWNDFYYYFQVEDMFEKDQELFRSIGKKLSEIK
Ga0209348_100373221	F038719	AGGAGG	MDSKTREKILHRCEILRYMGDDGIPCIFDELPDDELMEDCGWVLDKAHDDLDQYQFQVTRKIINEAPKRATSKDMWS
Ga0209348_100373223	F024809	AGG	MNYSQKVLFDDWISKCPIDNVQVQEPVSMVRTEFGKWDYLIKVYLTIDKEDWEQNQTPPGFSENLPSQDRLEGQ
Ga0209348_10037327	F025520	GGAGG	MSFEENFYILNCHSYIKKIPNTYLCADFLKDLENLDGTLKPHISDLKKDVTSYGMPSIKCTIPTLFIEIEYKTSDGHYLITREVFLYEEDYPTLKDLEAYKDKVSYGFASQVTQEIKDIVEAFHNGYGCMCLSSGDY