NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1003436

Scaffold Ga0209348_1003436


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1003436 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7168
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C620(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018189Metagenome236Y
F062820Metagenome / Metatranscriptome130N
F073646Metagenome120Y
F074765Metagenome119Y
F099447Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100343622F074765GGAGMPKTATPKQTKITVSKLSHRLSRNGWISYNCELRKGRTTLAAVDQEGVGGDERVAWNNTEHYLLIHHWILDTQRDFWREYEVENINYMVELGHKTMKDSIKEKLDLMKKFNLWEKLAKKKPKSWKEARTIQQQLDFHDDMVGAWTTVYVENKLADKYYD
Ga0209348_100343626F062820AGGAGMTTSTWKHINIGDTCVHCGRSTAYGHSDMLFVDRIPADADLLDDDGNPIGVREGYACRECIYVDEDDFFHEDNVSD
Ga0209348_10034365F099447GGAGGMPKKDADKIISHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTRDDYDNQKAFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR
Ga0209348_10034366F073646AGGAGMLQSEYLELAIELYDIYLANKKHPKRWLPIVELEKCKRGPGFWAKLKKMKGLYSELKPVFVDYVNRQDQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQKRRETSKEVTI
Ga0209348_10034369F018189AGGAGMELSKEQMEKVIFELESNYNSKIFDDENLIIIINLFKDYLNKGES
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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