Scaffold Ga0209348_1003412

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1003412
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7214
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-SSM7 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002137	Metagenome / Metatranscriptome	590	Y
F021321	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100341210	F021321	AGGGGG	MNRDYMANMLFNINDVVETIQGHSINDDIIEEYDKSQFEEEPKTLMDIPKDWEGSSISIGDCLLDLQTHINELYNYFSEEAE
Ga0209348_100341220	F002137	GGA	MFLLTLTEIGRMKVSQLIEWLSLQDKDDDVTFYYLKNDTLTNCQLETIIETDMGVEFTIQDTSELLEEAV