Scaffold Ga0209348_1003180

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1003180
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7483
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F016292	Metagenome	248	Y
F017045	Metagenome / Metatranscriptome	243	Y
F032821	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100318013	F017045	AGGAG	MALSNSLIRRYAKLQKLHDEIMRPIKNKGRQCVHTLNAKKKYDKTYRQIVGVENEDAKFIHG
Ga0209348_10031802	F032821	GGA	MIEIKLDLYDLFAASQTGLTRVFESLRLKQDWGHNYKGSVNDQIAKSISGACAELAVCRYLNTAFNFHVNHGANPDVMFGDVRCQVRSQLPKKHNSLIIRPKGSKAGEMYILVIDKSPTFEIKGFVNSSYVLNTTKYLTDFGISDRPEVHSVPIDKLTPINFLKDGAWN
Ga0209348_10031806	F016292	N/A	MTNHPKILGDCYKKFNLAHTSKSQNTIPDDIRFRNYIVLTPKEKAKLPSNCSFTGGTIAHEIIQSIKCKNKTFREAVKLIQDKITNYDPIDEKDKIKFNYIIENLEPLVQNHLDNINEIPKQDWKAELEYTHWADGIKTYFLSYVDLVGSTNFGDIKNVFGTLTKTKKGFSYSKKKCPRVPYHSDCLQIALYSKLLPKHKPFLTYASNDDRVIFTPENCVELRTESLQYYYEELVLYQKCWETKLELANGDAKVLAMLCKPDLSEIRKDGFWWKGIDPDIIKRFRSYYE
Ga0209348_10031807	F006892	AGAAG	MNKTTATGIVKPLRERVRDLETINKQHQKLNGELQQQISQKDKKIEELMEKINNPLKKMRGDGDL