Scaffold Ga0209348_1003072

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1003072
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7652
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F016292	Metagenome	248	Y
F066702	Metagenome	126	N
F081230	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100307215	F001839	N/A	MKYFEKFDKELINNKNLNSHEKLIYVICKSFEFAPNGCRISHKYLMKRTGIKTRRTLTKCLDRLQLFGMLARKQINNGTNHYVFEKNLMQDYIQHNLNKRRKITLAKNKQQKNYAMNNPKVIHIVNNRK
Ga0209348_100307217	F081230	AGGA	MITARLTTEELDRFLSIAAFVDRISPGVKKPVCTTNFQMLDVAPDKNTYKDSVASLARPKIVPTSKQLSIYEFVLLLLIDVKEDQRELMYLRHFPYRSFRQLKRFYIGDSHEKIRYQYHRALVDACVQANKNLAKYL
Ga0209348_10030727	F016292	N/A	MTNHPKILGDCYKKFNLAHTSKSQNTIPDDIRFRNYIVLTPKEKANLPSNCSFTGGTIAHEIIQKILCKNLTYEQALESVQEKIINYKSIDEKDDIKFGYIMDNMESLVNNHLENIAEVGKQTWKDELEFTHWANGISTYFLMYVDLVGQTEFFDIKNVFGTLTKTKKGFSYSKRKCPQVPYHSDCMQVALYSKELPKLKPCLTYASDSDRVVFTPSNCVELRPESLQYYYEELVLYQKCWEQKLKLADGDTKVLALLCKPDLSEIRKDGFWWKGLDPDIIKRFRSYYEL
Ga0209348_10030728	F066702	N/A	MKLMSEIRYRNYKAKIVKISKKQAESGNMYGCYNPNTQTISIQENLSKLILLNTVLHEIGHFIADKSSIRLKNLGEEGTVTFVADEFSKIFLQNPELLNFIKRCTTK