Scaffold Ga0209348_1003052

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1003052
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7679
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018623	Metagenome	234	Y
F040869	Metagenome	161	N
F048634	Metagenome	148	N
F057748	Metagenome	136	Y
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100305210	F048634	GGA	MRCLYLIKAIGIGVMKTLEAIEETLEILSQLQLNGSVKMEDSDKVSQCIQQLHQLRFNLKMKDDQNV
Ga0209348_100305212	F040869	GAGG	MEMKVFDQVYTELKLLQEEDLGDFQIAEECLMAAMVFTMNNAPSMMNGLCLISNTFNGILSEYTLKNIQMEGE
Ga0209348_100305218	F066135	AGG	MNGLRIHNVENIRVKSNDFETFQTIVVTVTDKANRDFELTLFTEKDFTPNMEVEHE
Ga0209348_100305222	F018623	GAGG	MKTYRVSWRQGRRVGAQGIFYPDSVVVQAENEKAAHLKAYDTHEHLMFVTVTEMDESNV
Ga0209348_10030525	F057748	N/A	MTKVYDFDWHRLKKEDILRRSLGYTEDVWQLIKDSGYNVNSVIDREQFFKDLEDLDDD