Scaffold Ga0209348_1002749

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1002749
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8163
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025520	Metagenome	201	Y
F036270	Metagenome	170	Y
F080142	Metagenome	115	Y
F090494	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100274913	F036270	GGAGG	MYIESTEKQGYHRGDPDGHRLLELIDLMGFDYDRFSSSGQQTYDEICTIIATVKEVKDEN
Ga0209348_100274917	F080142	GAGG	MKVGAGEFIKTNSGEVIWGSEAFINEVFKTLYGNEFRNEVWSYNDALQKIKNLVQQVEGN
Ga0209348_10027493	F090494	GAGG	VTKHTQTFKDFQTKHNLSYSNFFTFTNPKVLKNDKISDIPTAILMLMNTPKACPAAGSCRSVCLITSGNPIYLDNKIKCRIRRNNAFMSDYSVFLRYLVVNCFRHYAKNRTALKVGFRLNGVSDYAWEDFSVKLTSEDTDYIQKAFNIFIEPIRYGSVIEAVQKAIDSNDNKLLKNSVQFYDYSKRIDRNFSKIKALNYHITLSHGSKEDTFSKALELGLNYAAAFNLKKSQPLPTTFKYRGKSYNVIDGDITDARFTDDNKTTNIVGLHFKIVVNKDNEKKLDFCIA
Ga0209348_10027495	F025520	N/A	MSFEENFYILNCHSYIKKIPNTYLCAEFLKDLENLDGTLKPHISDLKKDVTSHGMPSIKCTIPTLFIEIEYKTSDGHYLINHEVFLYEEDYPTLKDLEAYKEKVSYGFASQVTQEIKDIVEAFHNGYGCMCLSSGDY