NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1002722

Scaffold Ga0209348_1002722


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1002722 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8194
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012584Metagenome279Y
F018189Metagenome236Y
F047122Metagenome150Y
F057382Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100272210F047122GAGGMKCPKCGKKAKASATRFIEYTHAQRRMRTCECGFKFITYERIEAGEQDRKSGKERKKEYYRKVLKELIDDLEGRTYLEKGKDSTIWEGV
Ga0209348_100272214F012584N/AMKLKPVLPENTFILNEDSLPTQSDADPYGKVMVFRKDVGWTVVQLPEVIQFLAMKHTHWTFTPETP
Ga0209348_100272218F018189GGAGMELSKYQMKLVIAKLEGSYNSKTFADENLQEIINLFKNYLNGGETNA
Ga0209348_100272219F057382AGGAGGMSKNDLTLAELKQLISTITFFQLGARTKELKTIKTKLKNQLKEMENN

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